This C++ version of BAT is still being maintained, but addition of new features is unlikely. Check out our new incarnation, BAT.jl, the Bayesian analysis toolkit in Julia. In addition to Metropolis-Hastings sampling, BAT.jl supports Hamiltonian Monte Carlo (HMC) with automatic differentiation, automatic prior-based parameter space transformations, and much more. See the BAT.jl documentation.
Results of performance testing for BAT version 0.4.3
Back to | overview for 0.4.3 | all versions |
Test "1d_binomial_2_7"
Results | |
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Status | good |
CPU time | 307.6 s |
Real time | 308 s |
Plots | 1d_binomial_2_7.ps |
Log | 1d_binomial_2_7.log |
Settings | |
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N chains | 10 |
N lag | 10 |
Convergence | true |
N iterations (pre-run) | 1000 |
N iterations (run) | 10000000 |
Subtest | Status | Target | Test | Uncertainty | Deviation [%] | Deviation [sigma] | Tol. (Good) | Tol. (Acceptable) | Tol. (Bad) |
---|---|---|---|---|---|---|---|---|---|
correlation par 0 | off | 0 | 0.07375 | 0.00734 | - | -10.05 | 0.3 | 0.5 | 0.7 |
chi2 | good | 94 | 119.5 | 13.71 | 27.16 | -1.862 | 41.13 | 68.56 | 95.98 |
KS | good | 1 | 0.3865 | 0.95 | -61.35 | 0.6457 | 0.95 | 0.99 | 0.9999 |
mean | good | 0.3333 | 0.3334 | 4.678e-05 | 0.0241 | -1.717 | 0.0001403 | 0.0002339 | 0.0003275 |
mode | good | 0.2857 | 0.275 | 0.03333 | -3.75 | 0.3214 | 0.1 | 0.1667 | 0.2333 |
variance | good | 0.02222 | 0.02267 | 0.002938 | 2.026 | -0.1533 | 0.008813 | 0.01469 | 0.02056 |
quantile10 | good | 0.1468 | 0.1468 | 0.03333 | 0.04621 | -0.002035 | 0.1 | 0.1667 | 0.2333 |
quantile20 | good | 0.1986 | 0.1987 | 0.03333 | 0.05129 | -0.003056 | 0.1 | 0.1667 | 0.2333 |
quantile30 | good | 0.2413 | 0.2414 | 0.03333 | 0.02572 | -0.001862 | 0.1 | 0.1667 | 0.2333 |
quantile40 | good | 0.2811 | 0.2811 | 0.03333 | 0.02486 | -0.002096 | 0.1 | 0.1667 | 0.2333 |
quantile50 | good | 0.3205 | 0.3206 | 0.03333 | 0.03925 | -0.003775 | 0.1 | 0.1667 | 0.2333 |
quantile60 | good | 0.3618 | 0.362 | 0.03333 | 0.04353 | -0.004724 | 0.1 | 0.1667 | 0.2333 |
quantile70 | good | 0.4075 | 0.4077 | 0.03333 | 0.03957 | -0.004837 | 0.1 | 0.1667 | 0.2333 |
quantile80 | good | 0.4621 | 0.4622 | 0.03333 | 0.0173 | -0.002399 | 0.1 | 0.1667 | 0.2333 |
quantile90 | good | 0.5383 | 0.5383 | 0.03333 | -0.0007802 | 0.000126 | 0.1 | 0.1667 | 0.2333 |
Subtest | Description |
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correlation par 0 | Calculate the auto-correlation among the points. |
chi2 | Calculate χ2 and compare with prediction for dof=number of bins with an expectation >= 10. Tolerance good: |χ2-E[χ2]| < 3 · (2 dof)1/2, Tolerance acceptable: |χ2-E[χ2]| < 5 · (2 dof)1/2, Tolerance bad: |χ2-E[χ2]| < 7 · (2 dof)1/2. |
KS | Calculate the Kolmogorov-Smirnov probability based on the ROOT implemention. Tolerance good: KS prob > 0.05, Tolerance acceptable: KS prob > 0.01 Tolerance bad: KS prob > 0.0001. |
mean | Compare sample mean, <x>, with expectation value of function, E[x]. Tolerance good: |<x> -E[x]| < 3 · (V[x]/n)1/2,Tolerance acceptable: |<x> -E[x]| < 5 · (V[x]/n)1/2,Tolerance bad: |<x> -E[x]| < 7 · (V[x]/n)1/2. |
mode | Compare mode of distribution with mode of the analytic function. Tolerance good: |x*-mode| < 3 · V[mode]1/2, Tolerance acceptable: |x*-mode| < 5 · V[mode]1/2 bin widths, Tolerance bad: |x*-mode| < 7 · V[mode]1/2. |
variance | Compare sample variance s2 of distribution with variance of function. Tolerance good: 3 · V[s2]1/2, Tolerance acceptable: 5 · V[s2]1/2, Tolerance bad: 7 · V[s2]1/2. |
quantile10 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |
quantile20 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |
quantile30 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |
quantile40 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |
quantile50 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |
quantile60 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |
quantile70 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |
quantile80 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |
quantile90 | Compare quantile of distribution from MCMC with the quantile of analytic function. Tolerance good: |q_{X}-E[q_{X}]|<3·V[q]1/2, Tolerance acceptable: |q_{X}-E[q_{X}]|<5·V[q]1/2, Tolerance bad: |q_{X}-E[q_{X}]|<7·V[q]1/2. |